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3 commits

Author SHA1 Message Date
Matthias Hörtenhuber
e745e167c1
Fix formatting in yaml files, add yamllint config () 
* fix yml formatting

* allow fastq.gz and fq.gz as file input, add meta.yml and test

* fix yaml files

* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"

This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.

* prettier magic!

* fix comments for yamllint

* remove node version number

* fix linting errors

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2022-02-15 11:15:27 +00:00
Maxime U. Garcia
ca3ae9ff4f
feat: update dragmap to follow new bwa/mem + bwamem2/mem logic () 2021-12-08 23:19:37 +01:00
Edmund Miller
f3ffa69b8d
Dragmap () 
* feat(dragmap): Add initial hastable module

* feat(dragmap): Add initial align module

* test(dragmap): Remove md5sum

Forgot sam files have a header. Might pipe this through samtools.

* build(dragmap): Add mulled container

* chore(dragmap): Update prefix

* feat(dragmap): Output a bam file

* feat(dragmap): Add log files

* Update modules/dragmap/align/meta.yml

Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
 2021-12-06 09:56:41 +01:00