4 commits

Author	SHA1	Message	Date
Kevin Menden	6973df628f	Fixing vcftools and bismark tests (#383) ... * fixed vcftools * fixed genomepreparation, methylationextractor * fixed deduplicate	2021-03-25 09:12:08 +00:00
Harshil Patel	acb1a12a56	Re-organise all test data (#354) ... * Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint	2021-03-24 09:53:41 +00:00
Patrick Hüther	7fe6f9fab2	bismark: remove underscores from process names (#303) ... * sanitize process names no underscores allowed * remove underscores from process names	2021-03-22 17:46:11 +01:00
Patrick Hüther	f9ce8664ba	add bismark/report (#297) ... * add bismark/align module * bismark/align: add tests * bismark/align: update meta.yml * bismark/align: skip checksum for alignment logs they contain timestamps * bismark/align: restore correct checksum caused some mixup in the last commit * bismark/align: add genome_preparation to filters * Fix conda version pin * change options to be a global var * remove params from meta.yml * add bismark/report * fix test filepaths * remove mysterious index files	2021-03-22 13:38:08 +01:00