Harshil Patel
c99ab09f8d
Add kraken2 pigz multi-tool container for compressing output fastq files ( #434 )
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* Add kraken2 pigz multi-tool container for compressing output fastq files
* Add untar to pytest config
* Add untar process to kraken2 tests
* Remove unneeded tags
2021-04-12 18:47:34 +02:00
Jose Espinosa-Carrasco
17fbdf96cb
Fix some module tests after switching to config data ( #386 )
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* Adding tar.gz kraken2 db to test data
* Update test path files for untar module
* Update test path files for kraken2/run module
* Update test path files for cat/fastq module
2021-03-24 18:28:07 +00:00
Harshil Patel
acb1a12a56
Re-organise all test data ( #354 )
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* Re-organise all test data
* Fix ECLint
* Fix ECLint agaaainn
* Now is not the time EClint
2021-03-24 09:53:41 +00:00
Jose Espinosa-Carrasco
313241749c
Add kraken2 run module ( #266 )
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* Add kraken2 run module
* Add kraken2 run module
* Add coronavirus kraken2 db
* Adding kraken2 run tests
* Update software/kraken2/run/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Fixing files commited by mistake
* Remove params for meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:08:06 +00:00
