Kevin Menden
043a7d1e3c
remove deprecated test tags ( #440 )
...
* remove deprecated test tags
* fix bowtie, gatk4/applybsqr
* fix gatk4 baserecalibrator
* fixed shovill
* fixed yara/mapper
* fixed kallistobustools/ref paths
2021-04-13 18:03:09 +01:00
Edmund Miller
a3684d9594
Lint modules ci ( #389 )
...
* ci: Add modules lint step
Moved it ahead of the nextflow install so ideally it'll fail before we
bother doing any more setup
* ci: _ => /
* Update tests/config/pytest_software.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 09:10:52 +01:00
Robert A. Petit III
c9256616b9
update tests for new config ( #384 )
...
* update tests for new config
* fix quast, update more
* more updates!
* more tests updated
* fix tests, added tabix gff3.gz
* Delete main.nf
Removing SPAdes from PR to avoid merge conflicts with https://github.com/nf-core/modules/pull/396
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 20:22:06 +01:00
Harshil Patel
acb1a12a56
Re-organise all test data ( #354 )
...
* Re-organise all test data
* Fix ECLint
* Fix ECLint agaaainn
* Now is not the time EClint
2021-03-24 09:53:41 +00:00
Maxime Garcia
0a4fa5050a
Update main.nf ( #314 )
2021-03-22 17:16:43 +00:00
Maxime Garcia
66fd57a8bc
fix: update tiddit_sv tests ( #272 )
2021-03-15 14:02:20 +00:00
JoseEspinosa
155c2a1185
Check only for vcf file to exists (includes cmd)
2021-02-26 07:14:29 +01:00
MaxUlysse
f62196a4a6
feat: add tiddit_sv module
2021-02-24 15:59:10 +01:00
