2 commits

Author	SHA1	Message	Date
Matthias Hörtenhuber	e745e167c1	Fix formatting in yaml files, add yamllint config (#1279) ... * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-02-15 11:15:27 +00:00
emnilsson	9402595711	New module seqtk/mergepe (#951) ... * First step into creating a seqtk/mergepe module to interleave fastQ input * First rewrite of main.nf to make the module perform the desired (interleave/merge of pe reads) task * Modifications to test the new seqtk/mergepe module. * Improving the seqtk/mergepe module to output single end reads as well, and making sure tests work * Modified so that gzip uses -n and that single read entries are symlinked with ln -s instead of copied, therefore updated test.yml as well. * Fix trailing whitespaces Co-authored-by: Daniel Lundin <daniel.lundin@lnu.se>	2021-10-28 16:53:33 +02:00