millironx/nf-core_modules
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19 commits

Author SHA1 Message Date
nvnieuwk
eab173f2bb
Added java options to vardict java (#1695) 
* Added java options to vardict java

* updated test.yml

* correctly added java options

* Added automatic version numbers for vardictjava

* possible fix for version number in conda

* removed the cram tests

* linting

* Update modules/vardictjava/main.nf

Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>

* Update modules/vardictjava/main.nf

Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>

* removed the version line

Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
 2022-08-10 14:13:03 +02:00
Mahesh Binzer-Panchal
233fa70811
Update manual versioning (#1813) 2022-06-27 10:35:41 +02:00
Nicolas Vannieuwkerke
96d4a31cc1 Moved the BED file to the main tuple 2022-05-03 15:31:05 +02:00
Nicolas Vannieuwkerke
d33253513f put the version on top of the file 2022-05-03 10:15:30 +02:00
Nicolas Vannieuwkerke
9a10e5beb5 Added the missing inputs in meta.yml + correct notation 2022-05-03 08:29:46 +02:00
Nicolas Vannieuwkerke
b8a59c2b17 Fixed version annotation 2022-05-03 08:20:10 +02:00
Nicolas Vannieuwkerke
4b04ca22dd Variable name change for var2vcf conversion arguments 2022-04-28 16:38:49 +02:00
Nicolas Vannieuwkerke
bdff37c3d7 Added the statistical tests and conversion to vcf 2022-04-28 15:33:27 +02:00
Nicolas Vannieuwkerke
6678ad4426 Added a header to the VCF 2022-04-28 14:54:20 +02:00
Nicolas Vannieuwkerke
bf18604471 fix for a linting issue 2022-04-28 14:29:37 +02:00
Nicolas Vannieuwkerke
8c98a78d2a Fixed the issue with the BED file 2022-04-28 14:07:55 +02:00
Nicolas Vannieuwkerke
45b4a61a15 Some small updates 2022-04-28 13:31:37 +02:00
Nicolas Vannieuwkerke
9df830f79d Added the .bai and .fai files 2022-04-28 10:23:07 +02:00
Matthias De Smet
def580ddb7
Add gzip for compressed output 2022-04-28 09:28:57 +02:00
Nicolas Vannieuwkerke
db43095b1a Split the bed file into a seperate input 2022-04-28 09:18:15 +02:00
Nicolas Vannieuwkerke
85c49a971f Fixed an issue with wrong file order 2022-04-28 09:07:52 +02:00
Nicolas Vannieuwkerke
7956d38e61 Fixed the test on nextflow level 2022-04-27 13:18:46 +02:00
Matthias De Smet
d57664b576
cleanup TODO's 2022-04-27 11:18:58 +02:00
Nicolas Vannieuwkerke
024c992ca7 created the module 2022-04-27 11:12:58 +02:00