9 commits

Author	SHA1	Message	Date
Anders Goncalves da Silva	ffc849761d	Edit test to output mpileup and passing args to samtools	2021-02-12 14:43:19 -08:00
Anders Goncalves da Silva	487ec7b793	Fix test.yml	2021-02-12 14:42:42 -08:00
Anders Goncalves da Silva	8b3c16a518	Add ref FASTA to test main.nf	2021-02-12 11:29:16 -08:00
Anders Goncalves da Silva	df9125b46a	Fix test name ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 12:05:01 -08:00
Anders Goncalves da Silva	40bbf94ef9	Update filename for outputted mpileup file in test ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 12:04:46 -08:00
Anders Goncalves da Silva	68de6fef0d	Fix indentation ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 12:04:15 -08:00
Anders Goncalves da Silva	ffa9cf85b1	Clean up header params ... I used these for testing and forgot to remove them Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 12:03:50 -08:00
Anders Goncalves da Silva	1f6419f8f5	Fix indentation ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 10:55:24 -08:00
Anders Goncalves da Silva	8f546a1f95	Add ivar consensus	2021-02-09 10:26:35 -08:00