process PASTY { tag "$meta.id" label 'process_single' conda (params.enable_conda ? "bioconda::pasty=1.0.0" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/pasty:1.0.0--hdfd78af_0': 'quay.io/biocontainers/pasty:1.0.0--hdfd78af_0' }" input: tuple val(meta), path(fasta) output: tuple val(meta), path("${prefix}.tsv") , emit: tsv tuple val(meta), path("${prefix}.blastn.tsv") , emit: blast tuple val(meta), path("${prefix}.details.tsv"), emit: details path "versions.yml" , emit: versions when: task.ext.when == null || task.ext.when script: def args = task.ext.args ?: '' prefix = task.ext.prefix ?: "${meta.id}" """ pasty \\ $args \\ --prefix $prefix \\ --assembly $fasta cat <<-END_VERSIONS > versions.yml "${task.process}": pasty: \$(echo \$(pasty --version 2>&1) | sed 's/^.*pasty, version //;' ) END_VERSIONS """ }