name: pangolin
description: Phylogenetic Assignment of Named Global Outbreak LINeages
keywords:
    - covid
    - pangolin
    - lineage
tools:
    - star:
        description: |
            Phylogenetic Assignment of Named Global Outbreak LINeages
        homepage: https://github.com/cov-lineages/pangolin#pangolearn-description
        manual: https://github.com/cov-lineages/pangolin#pangolearn-description
        licence: ['GPL-3.0-or-later']
input:
    - meta:
        type: map
        description: |
            Groovy Map containing sample information
    - fasta:
        type: file
        description: |
            The genome assembly to be evaluated
output:
    - report:
        type: file
        description: Pangolin lineage report
        pattern: "*.{csv}"
    - versions:
        type: file
        description: File containing software versions
        pattern: "versions.yml"
authors:
    - "@kevinmenden"
    - "@drpatelh"