- name: Run bismark deduplicate test workflow
  command: nextflow run ./tests/software/bismark/deduplicate -entry test_bismark_deduplicate -c tests/config/nextflow.config
  tags:
    - bismark
    - bismark/deduplicate
  files:
    - path: output/bismark/test_methylated_paired_end.deduplicated.bam
    - path: output/bismark/test_methylated_paired_end.deduplication_report.txt
      md5sum: 3876d694f10c58f47e380ba8476a356b