name: "fastk_merge"
description: A tool to merge FastK histograms
keywords:
  - merge
  - k-mer
  - histogram
  - fastk
tools:
  - fastk:
      description: "A fast K-mer counter for high-fidelity shotgun datasets"
      homepage: "https://github.com/thegenemyers/FASTK"
      documentation: ""
      tool_dev_url: "https://github.com/thegenemyers/FASTK"
      doi: ""
      licence: "https://github.com/thegenemyers/FASTK/blob/master/LICENSE"

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - fastk_hist:
      type: file
      description: A histogram files from the program FastK
      pattern: "*.hist"
  - fastk_ktab:
      type: file
      description: Histogram ktab files from the program FastK (option -t)
      pattern: "*.ktab*"
  - fastk_prof:
      type: file
      description: Histogram profile files from the program FastK (option -p)
      pattern: "*.{prof,pidx}*"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - fastk_hist:
      type: file
      description: A histogram files from the program FastK
      pattern: "*.hist"
  - fastk_ktab:
      type: file
      description: Histogram ktab files from the program FastK (option -t)
      pattern: "*.ktab*"
  - fastk_prof:
      type: file
      description: Histogram profile files from the program FastK (option -p)
      pattern: "*.{prof,pidx}*"

authors:
  - "@mahesh-panchal"