- name: kraken2 kraken2 test_kraken2_kraken2_single_end
  command: nextflow run tests/modules/kraken2/kraken2 -entry test_kraken2_kraken2_single_end -c tests/config/nextflow.config
  tags:
    - kraken2
    - kraken2/kraken2
  files:
    - path: output/kraken2/test.classified.fastq.gz
    - path: output/kraken2/test.kraken2.report.txt
      md5sum: 4227755fe40478b8d7dc8634b489761e
    - path: output/kraken2/test.unclassified.fastq.gz
    - path: output/kraken2/versions.yml
      md5sum: 6e3ad947ac8dee841a89216071c181cc
    - path: output/untar/versions.yml

- name: kraken2 kraken2 test_kraken2_kraken2_paired_end
  command: nextflow run tests/modules/kraken2/kraken2 -entry test_kraken2_kraken2_paired_end -c tests/config/nextflow.config
  tags:
    - kraken2
    - kraken2/kraken2
  files:
    - path: output/kraken2/test.classified_1.fastq.gz
    - path: output/kraken2/test.classified_2.fastq.gz
    - path: output/kraken2/test.kraken2.report.txt
      md5sum: 4227755fe40478b8d7dc8634b489761e
    - path: output/kraken2/test.unclassified_1.fastq.gz
    - path: output/kraken2/test.unclassified_2.fastq.gz
    - path: output/kraken2/versions.yml
      md5sum: 604482fe7a4519f890fae9c8beb1bd6e
    - path: output/untar/versions.yml

- name: kraken2 kraken2 test_kraken2_kraken2_classifyreads
  command: nextflow run tests/modules/kraken2/kraken2 -entry test_kraken2_kraken2_classifyreads -c tests/config/nextflow.config
  tags:
    - kraken2
    - kraken2/kraken2
  files:
    - path: output/kraken2/test.kraken2.classifiedreads.txt
      md5sum: e7a90531f0d8d777316515c36fe4cae0
    - path: output/kraken2/test.kraken2.report.txt
      md5sum: 4227755fe40478b8d7dc8634b489761e
    - path: output/kraken2/versions.yml
      md5sum: 3488c304259e83c5bea573403293fce9
    - path: output/untar/versions.yml