- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_just_variants
  command: nextflow run tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_just_variants -c tests/config/nextflow.config
  tags:
    - gatk4/getpileupsummaries
    - gatk4
  files:
    - path: output/gatk4/test.pileups.table
      md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469
    - path:  output/gatk4/versions.yml
      md5sum: dd98374e3b5d35ddd1c6b3fa7e662dc5

- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_separate_sites
  command: nextflow run tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_separate_sites -c tests/config/nextflow.config
  tags:
    - gatk4/getpileupsummaries
    - gatk4
  files:
    - path:  output/gatk4/test.pileups.table
      md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469
    - path:  output/gatk4/versions.yml
      md5sum: 080b6af7df182558aeab117668388d59

- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_separate_sites_cram
  command: nextflow run tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_separate_sites_cram -c tests/config/nextflow.config
  tags:
    - gatk4/getpileupsummaries
    - gatk4
  files:
    - path:  output/gatk4/test.pileups.table
      md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469
    - path:  output/gatk4/versions.yml
      md5sum: 33458a9efa6d61c713af9f7b722d7134