- name: gatk4 markduplicates test_gatk4_markduplicates
  command: nextflow run tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates -c tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicates/nextflow.config
  tags:
    - gatk4
    - gatk4/markduplicates
  files:
    - path: output/gatk4/test.bai
      md5sum: c8f7a9e426c768577f88f59cb1336bf3
    - path: output/gatk4/test.bam
      md5sum: fba0c99a0b087c90113a210e4465f91b
    - path: output/gatk4/test.metrics
    - path: output/gatk4/versions.yml
      md5sum: dacbab0e112d2403b09df138d4e62895

- name: gatk4 markduplicates test_gatk4_markduplicates_multiple_bams
  command: nextflow run tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates_multiple_bams -c tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicates/nextflow.config
  tags:
    - gatk4
    - gatk4/markduplicates
  files:
    - path: output/gatk4/test.bai
      md5sum: 325932c51f6898b02dfec469c984ba28
    - path: output/gatk4/test.bam
      md5sum: f7cba8104e3a7024a5e00c02304f7dea
    - path: output/gatk4/test.metrics
    - path: output/gatk4/versions.yml
      md5sum: 14d0d085df7d2f9e770578d92c329299