process NANOPLOT { tag "$meta.id" label 'process_low' conda (params.enable_conda ? 'bioconda::nanoplot=1.39.0' : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/nanoplot:1.39.0--pyhdfd78af_0' : 'quay.io/biocontainers/nanoplot:1.39.0--pyhdfd78af_0' }" input: tuple val(meta), path(ontfile) output: tuple val(meta), path("*.html"), emit: html tuple val(meta), path("*.png") , emit: png tuple val(meta), path("*.txt") , emit: txt tuple val(meta), path("*.log") , emit: log path "versions.yml" , emit: versions script: def args = task.ext.args ?: '' def input_file = ("$ontfile".endsWith(".fastq.gz")) ? "--fastq ${ontfile}" : ("$ontfile".endsWith(".txt")) ? "--summary ${ontfile}" : '' """ NanoPlot \\ $args \\ -t $task.cpus \\ $input_file cat <<-END_VERSIONS > versions.yml "${task.process}": nanoplot: \$(echo \$(NanoPlot --version 2>&1) | sed 's/^.*NanoPlot //; s/ .*\$//') END_VERSIONS """ }