- name: gatk4 markduplicates test_gatk4_markduplicates
  command: nextflow run tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates -c tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicates/nextflow.config
  tags:
    - gatk4
    - gatk4/markduplicates
  files:
    - path: output/gatk4/test.bai
      md5sum: e9c125e82553209933883b4fe2b8d7c2
    - path: output/gatk4/test.bam
      md5sum: 1c6b1372121eddccd086456aa1c174bf
    - path: output/gatk4/test.metrics
    - path: output/gatk4/versions.yml
      md5sum: 0e46677bdf1e5df892578cec6bc26dba

- name: gatk4 markduplicates test_gatk4_markduplicates_multiple_bams
  command: nextflow run tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates_multiple_bams -c tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicates/nextflow.config
  tags:
    - gatk4
    - gatk4/markduplicates
  files:
    - path: output/gatk4/test.bai
      md5sum: bad71df9c876e72a5bc0a3e0fd755f92
    - path: output/gatk4/test.bam
      md5sum: d1b85fb578a97f05b484c0d241a9aaad
    - path: output/gatk4/test.metrics
    - path: output/gatk4/versions.yml
      md5sum: 6844dc08e677455205e2270ac291c951