- name: minimap2 align single-end
  command: nextflow run ./tests/software/minimap2/align -entry test_minimap2_align_single_end -c tests/config/nextflow.config
  tags:
    - minimap2
    - minimap2_align
    - minimap2_align_single_end
  files:
    - path: output/minimap2/test.paf
      md5sum: f92567a67adb0563bd6ff9ed97877be9

- name: minimap2 align paired-end
  command: nextflow run ./tests/software/minimap2/align -entry test_minimap2_align_paired_end -c tests/config/nextflow.config
  tags:
    - minimap2
    - minimap2_align
    - minimap2_align_paired_end
  files:
    - path: output/minimap2/test.paf
      md5sum: b57e4009b113dcd48755cb713f613942

- name: minimap2 align pairwise
  command: nextflow run ./tests/software/minimap2/align -entry test_minimap2_align_pairwise -c tests/config/nextflow.config
  tags:
    - minimap2
    - minimap2_align
    - minimap2_align_pairwise
  files:
    - path: output/minimap2/test.paf