name: bowtie2_build
description: Builds bowtie index for reference genome
keywords:
    - build
    - index
    - fasta
    - genome
    - reference
tools:
    - bowtie2:
          description: |
              Bowtie 2 is an ultrafast and memory-efficient tool for aligning
              sequencing reads to long reference sequences.
          homepage: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
          documentation: http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml
          doi: 10.1038/nmeth.1923
input:
    - fasta:
          type: file
          description: Input genome fasta file
output:
    - index:
          type: file
          description: Bowtie2 genome index files
          pattern: "*.bt2"
    - version:
          type: file
          description: File containing software version
          pattern: "*.{version.txt}"
authors:
    - "@joseespinosa"
    - "@drpatelh"