name: genmap_mappability description: create mappability file for a genome keywords: - mappability tools: - genmap: description: Ultra-fast computation of genome mappability. homepage: https://github.com/cpockrandt/genmap documentation: https://github.com/cpockrandt/genmap tool_dev_url: https://github.com/cpockrandt/genmap doi: "10.1093/bioinformatics/btaa222" licence: ['BSD'] input: - fasta: type: file description: fasta file pattern: "*.{fasta,fa}" - index: type: file description: index file output: - version: type: file description: File containing software version pattern: "*.{version.txt}" - wig: type: file description: genmap wig mappability file pattern: "*.wig" - bedgraph: type: file description: genmap bedgraph mappability file pattern: "*.bedgraph" - txt: type: file description: genmap text mappability file pattern: "*.txt" authors: - "@jianhong"