name: cnvpytor_histogram description: calculates read depth histograms keywords: - cnv calling - histogram tools: - cnvpytor: description: calling CNVs using read depth homepage: https://github.com/abyzovlab/CNVpytor documentation: https://github.com/abyzovlab/CNVpytor tool_dev_url: https://github.com/abyzovlab/CNVpytor doi: "10.1101/2021.01.27.428472v1" licence: ["MIT"] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test' ] - pytor: type: file description: pytor file containing read depth data pattern: "*.{pytor}" - bin_sizes: type: string description: list of binsizes separated by space e.g. "1000 10000" and "1000" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test' ] - pytor: type: file description: pytor file containing read depth histograms binned based on given bin size(s) pattern: "*.{pytor}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@sima-r"