- name: Run bowtie index command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_index -c tests/config/nextflow.config tags: - bowtie - bowtie_index files: - path: output/bowtie/bowtie/NC_010473.index.1.ebwt md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c - path: output/bowtie/bowtie/NC_010473.index.2.ebwt md5sum: bfd10c5319c6a0dbc540fd789254a5dd - path: output/bowtie/bowtie/NC_010473.index.3.ebwt md5sum: cd201e81724f3099131aec16ef2cc53b - path: output/bowtie/bowtie/NC_010473.index.4.ebwt md5sum: bbb9d6d21ad765d135f95290204e8433 - path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt md5sum: 44f719c2fe42e1f35d54e798775846d1 - path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt md5sum: f3c398bba5158f4039334a932d79c051 - name: Run bowtie index and align single-end command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_alignment_single_end -c tests/config/nextflow.config tags: - bowtie - bowtie_align files: - path: output/bowtie/bowtie/NC_010473.index.1.ebwt md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c - path: output/bowtie/bowtie/NC_010473.index.2.ebwt md5sum: bfd10c5319c6a0dbc540fd789254a5dd - path: output/bowtie/bowtie/NC_010473.index.3.ebwt md5sum: cd201e81724f3099131aec16ef2cc53b - path: output/bowtie/bowtie/NC_010473.index.4.ebwt md5sum: bbb9d6d21ad765d135f95290204e8433 - path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt md5sum: 44f719c2fe42e1f35d54e798775846d1 - path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt md5sum: f3c398bba5158f4039334a932d79c051 - path: output/bowtie/test.out md5sum: a81cb18024616415a6cec3108a36fccd - path: output/bowtie/test.bam md5sum: 8179c68a819accbc9137dc881736106f - name: Run bowtie index and align paired-end command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_alignment_paired_end -c tests/config/nextflow.config tags: - bowtie - bowtie_align files: - path: output/bowtie/bowtie/NC_010473.index.1.ebwt md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c - path: output/bowtie/bowtie/NC_010473.index.2.ebwt md5sum: bfd10c5319c6a0dbc540fd789254a5dd - path: output/bowtie/bowtie/NC_010473.index.3.ebwt md5sum: cd201e81724f3099131aec16ef2cc53b - path: output/bowtie/bowtie/NC_010473.index.4.ebwt md5sum: bbb9d6d21ad765d135f95290204e8433 - path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt md5sum: 44f719c2fe42e1f35d54e798775846d1 - path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt md5sum: f3c398bba5158f4039334a932d79c051 - path: output/bowtie/test.out md5sum: a23e9a2a76e949aeb3693bcfae41a615 - path: output/bowtie/test.bam md5sum: 9ce5aebf37128f4bb1d24e9548e22009