name: "slimfastq"
description: Fast, efficient, lossless compression of FASTQ files.
keywords:
  - FASTQ
  - compression
  - lossless
tools:
  - "slimfastq":
      description: "slimfastq efficiently compresses/decompresses FASTQ files"
      homepage: "https://github.com/Infinidat/slimfastq"
      tool_dev_url: "https://github.com/Infinidat/slimfastq"
      licence: "['BSD-3-clause']"

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - fastq:
      type: file
      description: Either a single-end FASTQ file or paired-end files.
      pattern: "*.{fq.gz,fastq.gz}"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - sfq:
      type: file
      description: Either one or two sequence files in slimfastq compressed format.
      pattern: "*.{sfq}"

authors:
  - "@Midnighter"