- name: svtk standardize test_svtk_standardize
  command: nextflow run ./tests/modules/svtk/standardize -entry test_svtk_standardize -c ./tests/config/nextflow.config -c ./tests/modules/svtk/standardize/nextflow.config
  tags:
    - svtk
    - svtk/standardize
  files:
    - path: output/manta/test.candidate_small_indels.vcf.gz
    - path: output/manta/test.candidate_small_indels.vcf.gz.tbi
      md5sum: 4cb176febbc8c26d717a6c6e67b9c905
    - path: output/manta/test.candidate_sv.vcf.gz
    - path: output/manta/test.candidate_sv.vcf.gz.tbi
      md5sum: 4cb176febbc8c26d717a6c6e67b9c905
    - path: output/manta/test.diploid_sv.vcf.gz
    - path: output/manta/test.diploid_sv.vcf.gz.tbi
      md5sum: 4cb176febbc8c26d717a6c6e67b9c905
    - path: output/svtk/test.std.vcf.gz
      md5sum: f7530f3bc7e6020e758cc996adc8ae35

- name: svtk standardize test_svtk_standardize_no_contigs
  command: nextflow run ./tests/modules/svtk/standardize -entry test_svtk_standardize_no_contigs -c ./tests/config/nextflow.config -c ./tests/modules/svtk/standardize/nextflow.config
  tags:
    - svtk
    - svtk/standardize
  files:
    - path: output/manta/test.candidate_small_indels.vcf.gz
    - path: output/manta/test.candidate_small_indels.vcf.gz.tbi
      md5sum: 4cb176febbc8c26d717a6c6e67b9c905
    - path: output/manta/test.candidate_sv.vcf.gz
    - path: output/manta/test.candidate_sv.vcf.gz.tbi
      md5sum: 4cb176febbc8c26d717a6c6e67b9c905
    - path: output/manta/test.diploid_sv.vcf.gz
    - path: output/manta/test.diploid_sv.vcf.gz.tbi
      md5sum: 4cb176febbc8c26d717a6c6e67b9c905
    - path: output/svtk/test.std.vcf.gz
      md5sum: ea67be7438a0fb72db8096e1bc1bb957