- name: bracken combinebrackenoutputs test_bracken_combinebrackenoutputs
  command: nextflow run ./tests/modules/bracken/combinebrackenoutputs -entry test_bracken_combinebrackenoutputs -c ./tests/config/nextflow.config  -c ./tests/modules/bracken/combinebrackenoutputs/nextflow.config
  tags:
    - bracken/combinebrackenoutputs
    - bracken
  files:
    - path: output/bracken/bracken_combined.txt
      contains:
        - "name	taxonomy_id	taxonomy_lvl"