- name: strelka germline test_strelka_germline
  command: nextflow run ./tests/modules/strelka/germline -entry test_strelka_germline -c ./tests/config/nextflow.config -c ./tests/modules/strelka/germline/nextflow.config
  tags:
    - strelka
    - strelka/germline
  files:
    - path: output/strelka/test.genome.vcf.gz
    - path: output/strelka/test.genome.vcf.gz.tbi
    - path: output/strelka/test.variants.vcf.gz
    - path: output/strelka/test.variants.vcf.gz.tbi

- name: strelka germline test_strelka_germline_target_bed
  command: nextflow run ./tests/modules/strelka/germline -entry test_strelka_germline_target_bed -c ./tests/config/nextflow.config -c ./tests/modules/strelka/germline/nextflow.config
  tags:
    - strelka
    - strelka/germline
  files:
    - path: output/strelka/test.genome.vcf.gz
    - path: output/strelka/test.genome.vcf.gz.tbi
    - path: output/strelka/test.variants.vcf.gz
    - path: output/strelka/test.variants.vcf.gz.tbi