process BEDTOOLS_COMPLEMENT { tag {input_file} container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0' input: path (input_file) path (fasta_sizes) val (bedtools_complement_args) output: stdout() script: """ bedtools complement -i ${input_file} -g ${fasta_sizes} ${bedtools_complement_args} """ }