- name: samtools ampliconclip no stats no rejects
  command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_no_stats_no_rejects -c ./tests/config/nextflow.config -c ./tests/modules/samtools/ampliconclip/nextflow.config
  tags:
    - samtools
    - samtools/ampliconclip
  files:
    - path: output/samtools/test.bam
      md5sum: d270363a7fb3d96be2df211099efc75b

- name: samtools ampliconclip no stats with rejects
  command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_no_stats_with_rejects -c ./tests/config/nextflow.config -c ./tests/modules/samtools/ampliconclip/nextflow.config
  tags:
    - samtools
    - samtools/ampliconclip
  files:
    - path: output/samtools/test.bam
      md5sum: e7c4e64c259212e1670f6de96a5549b4
    - path: output/samtools/test.cliprejects.bam
      md5sum: b7c057b11950c2271a0c92236bee94b7

- name: samtools ampliconclip with stats with rejects
  command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_with_stats_with_rejects -c ./tests/config/nextflow.config -c ./tests/modules/samtools/ampliconclip/nextflow.config
  tags:
    - samtools
    - samtools/ampliconclip
  files:
    - path: output/samtools/test.bam
      md5sum: e75992d4ff69cbaed9a089231be86b5e
    - path: output/samtools/test.cliprejects.bam
      md5sum: 729f03e7a2801d2c56c32bef8f3d6ead
    - path: output/samtools/test.clipstats.txt
      md5sum: fc23355e1743d47f2541f2cb1a7a0cda