name: hmmcopy_gccounter description: gcCounter function from HMMcopy utilities, used to generate GC content in non-overlapping windows from a fasta reference keywords: - hmmcopy - gccounter - cnv tools: - hmmcopy: description: C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy homepage: https://github.com/shahcompbio/hmmcopy_utils documentation: https://github.com/shahcompbio/hmmcopy_utils tool_dev_url: https://github.com/shahcompbio/hmmcopy_utils doi: "" licence: ['GPL v3'] input: - fasta: type: file description: Input genome fasta file output: - versions: type: file description: File containing software versions pattern: "versions.yml" - wig: type: file description: wig file containing gc content of each window of the genome pattern: "*.{gc.wig}" authors: - "@sppearce"