name: hmmcopy_generatemap description: Perl script (generateMap.pl) generates the mappability of a genome given a certain size of reads, for input to hmmcopy mapcounter. Takes a very long time on large genomes, is not parallelised at all. keywords: - hmmcopy - mapcounter - mappability tools: - hmmcopy: description: C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy homepage: https://github.com/shahcompbio/hmmcopy_utils documentation: https://github.com/shahcompbio/hmmcopy_utils tool_dev_url: https://github.com/shahcompbio/hmmcopy_utils doi: "" licence: ['GPL v3'] input: - fasta: type: file description: Input genome fasta file output: - versions: type: file description: File containing software versions pattern: "versions.yml" - bigwig: type: file description: bigwig file containing the mappability of the genome pattern: "*.{map.bw}" authors: - "@sppearce"