name: hmmcopy_mapcounter description: mapCounter function from HMMcopy utilities, used to generate mappability in non-overlapping windows from a bigwig file keywords: - hmmcopy - mapcounter - cnv tools: - hmmcopy: description: C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy homepage: https://github.com/shahcompbio/hmmcopy_utils documentation: https://github.com/shahcompbio/hmmcopy_utils tool_dev_url: https://github.com/shahcompbio/hmmcopy_utils doi: "" licence: ['GPL v3'] input: - bigwig: type: file description: BigWig file with the mappability score of the genome, for instance made with generateMap function. pattern: "*.wig" output: - versions: type: file description: File containing software versions pattern: "versions.yml" - wig: type: file description: wig file containing mappability of each window of the genome pattern: "*.map.wig" authors: - "@sppearce"