name: svdb_merge description: The merge module merges structural variants within one or more vcf files. keywords: - structural variants tools: - svdb: description: structural variant database software homepage: https://github.com/J35P312/SVDB documentation: https://github.com/J35P312/SVDB/blob/master/README.md licence: ['MIT'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test' ] - priority: type: list description: prioritise the input vcf files according to this list, e.g ['tiddit','cnvnator'] - vcfs: type: list description: Two or more VCF files. Order of files should correspond to the order of tags used for priority. pattern: "*.{vcf,vcf.gz}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test' ] - versions: type: file description: File containing software versions pattern: "versions.yml" - vcf: type: file description: merged VCF file pattern: "*_sv_merge.vcf" authors: - "@ramprasadn"