name: svdb_query description: Query a structural variant database, using a vcf file as query keywords: - structural variants tools: - svdb: description: structural variant database software homepage: https://github.com/J35P312/SVDB documentation: https://github.com/J35P312/SVDB/blob/master/README.md licence: ['MIT'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - vcf: type: file description: query vcf file pattern: "*.{vcf,vcf.gz}" - vcf_db: type: file description: database vcf file pattern: "*.{vcf,vcf.gz}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test' ] - versions: type: file description: File containing software versions pattern: "versions.yml" - vcf: type: file description: Annotated output VCF file pattern: "*_ann_svdbq.vcf" authors: - "@ramprasadn"