- name: Run samtools flagstat test workflow
  command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_flagstat -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools_flagstat
  files:
    - path: output/samtools/test.paired_end.sorted.bam.flagstat
      md5sum: 80590621c74f5ee43ada20d010a3837f

- name: Run samtools idxstats test workflow
  command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_idxstats -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools_idxstats
  files:
    - path: output/samtools/test.paired_end.sorted.bam.idxstats
      md5sum: 3bee8b7d55e412da2b3816c5a18d60d5