#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { BAMTOOLS_SPLIT as BAMTOOLS_SPLIT_SINGLE   } from '../../../../modules/bamtools/split/main.nf'
include { BAMTOOLS_SPLIT as BAMTOOLS_SPLIT_MULTIPLE } from '../../../../modules/bamtools/split/main.nf'

workflow test_bamtools_split_single_input {

    input = [
        [ id:'test', single_end:false ], // meta map
        file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
    ]

    BAMTOOLS_SPLIT_SINGLE ( input )
}

workflow test_bamtools_split_multiple {

    input = [
        [ id:'test', single_end:false ], // meta map
        [
            file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
            file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true)
        ]
    ]

    BAMTOOLS_SPLIT_MULTIPLE ( input )
}