- name: gatk4 markduplicates test_gatk4_markduplicates
  command: nextflow run tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates -c tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicates/nextflow.config
  tags:
    - gatk4
    - gatk4/markduplicates
  files:
    - path: output/gatk4/test.bai
      md5sum: c8f7a9e426c768577f88f59cb1336bf3
    - path: output/gatk4/test.bam
      md5sum: 58533ddab47f7ac07f7b10e7f4aac234
    - path: output/gatk4/test.metrics
    - path: output/gatk4/versions.yml

- name: gatk4 markduplicates test_gatk4_markduplicates_multiple_bams
  command: nextflow run tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates_multiple_bams -c tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicates/nextflow.config
  tags:
    - gatk4
    - gatk4/markduplicates
  files:
    - path: output/gatk4/test.bai
      md5sum: bad71df9c876e72a5bc0a3e0fd755f92
    - path: output/gatk4/test.bam
      md5sum: 112580c24b43331950f24f9adea30788
    - path: output/gatk4/test.metrics
    - path: output/gatk4/versions.yml