#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { FASTP } from '../../../software/fastp/main.nf'  addParams( options: [:] )

/*
 * Test with single-end data
 */
workflow test_fastp_single_end {
    input = [ [ id:'test', single_end:true ], // meta map
              [ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
            ]

    FASTP ( input )
}

/*
 * Test with paired-end data
 */
workflow test_fastp_paired_end {
    input = [ [ id:'test', single_end:false ], // meta map
              [ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
                file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
            ]
            
    FASTP ( input )
}