- name: Run fastqc single-end test workflow
  command: nextflow run ./tests/fastqc/ -profile docker -entry test_single_end
  tags:
    - fastqc
  files:
    - path: output/test_single_end/test_fastqc.html
      md5sum: 7027e72c3e55292c1567f12e02565e3b
    - path: output/test_single_end/test_fastqc.zip

- name: Run fastqc paired-end test workflow
  command: nextflow run ./tests/fastqc/ -profile docker -entry test_paired_end
  tags:
    - fastqc
  files:
    - path: output/test_paired_end/test_1_fastqc.html
      md5sum: b3796b4323dc34970b7461f813135254
    - path: output/test_paired_end/test_2_fastqc.html
      md5sum: 55182467f48ca5ed88a2608ea57a1afc
    - path: output/test_paired_end/test_1_fastqc.zip
    - path: output/test_paired_end/test_2_fastqc.zip