process GENMAP_MAPPABILITY { tag '$fasta' label 'process_high' conda (params.enable_conda ? "bioconda::genmap=1.3.0" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/genmap:1.3.0--h1b792b2_1' : 'quay.io/biocontainers/genmap:1.3.0--h1b792b2_1' }" input: path index output: path "*.wig" , optional:true, emit: wig path "*.bedgraph" , optional:true, emit: bedgraph path "*.txt" , optional:true, emit: txt path "versions.yml" , emit: versions script: def args = task.ext.args ?: '' """ genmap \\ map \\ $args \\ -I $index \\ -O mappability cat <<-END_VERSIONS > versions.yml "${task.process}": genmap: \$(genmap --version 2>&1 | sed 's/GenMap version: //; s/SeqAn.*\$//') END_VERSIONS """ }