- name: isoseq3 refine test_isoseq3_refine
  command: nextflow run ./tests/modules/isoseq3/refine -entry test_isoseq3_refine -c ./tests/config/nextflow.config -c ./tests/modules/isoseq3/refine/nextflow.config
  tags:
    - isoseq3
    - isoseq3/refine
  files:
    - path: output/isoseq3/test.refine.bam
      md5sum: e8387afd5f66a7f6a89f90a0dcf3b823
    - path: output/isoseq3/test.refine.bam.pbi
      md5sum: 8097cad9e472f2f79de6de5fe3dcc822
    - path: output/isoseq3/test.refine.consensusreadset.xml
      contains: [ 'pbds:ConsensusReadSet' ]
    - path: output/isoseq3/test.refine.filter_summary.json
      md5sum: 87f8bdd5c60741f47b8a991e002f7ef3
    - path: output/isoseq3/test.refine.report.csv
      md5sum: d42a139e5d9b08396bdb087c01243ea9