#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { PICARD_COLLECTMULTIPLEMETRICS } from '../../../../modules/picard/collectmultiplemetrics/main.nf'

workflow test_picard_collectmultiplemetrics {
    input = [ [ id:'test', single_end:false ], // meta map
              file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
            ]
    fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)

    PICARD_COLLECTMULTIPLEMETRICS ( input, fasta )
}