- name: snapaligner align test_snapaligner_single
  command: nextflow run ./tests/modules/snapaligner/align -entry test_snapaligner_single -c ./tests/config/nextflow.config  -c ./tests/modules/snapaligner/align/nextflow.config
  tags:
    - snapaligner/align
    - snapaligner
  files:
    - path: output/snapaligner/test.bam
      md5sum: 2dea536f28c041c1108add3523879243
    - path: output/snapaligner/test.bam.bai
      md5sum: 3f5cd1e8379b06554778a59b179ccc10

- name: snapaligner align test_snapaligner_paired
  command: nextflow run ./tests/modules/snapaligner/align -entry test_snapaligner_paired -c ./tests/config/nextflow.config  -c ./tests/modules/snapaligner/align/nextflow.config
  tags:
    - snapaligner/align
    - snapaligner
  files:
    - path: output/snapaligner/test.bam
      md5sum: 941bf870355dd34ebe2ef43ea41abcc4
    - path: output/snapaligner/test.bam.bai
      md5sum: ce7fd5bc6f0196e6ad70d3710e17e559