name: MultiQC
description: Aggregate results from bioinformatics analyses across many samples into a single report
keywords:
    - QC
    - bioinformatics tools
    - Beautiful stand-alone HTML report
tools:
    - multiqc:
        description: |
            MultiQC searches a given directory for analysis logs and compiles a HTML report.
            It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.
        homepage: https://multiqc.info/
        documentation: https://multiqc.info/docs/
        licence: ['GPL-3.0-or-later']
input:
    - multiqc_files:
        type: file
        description: |
            List of reports / files recognised by MultiQC, for example the html and zip output of FastQC
output:
    - report:
        type: file
        description: MultiQC report file
        pattern: "multiqc_report.html"
    - data:
        type: dir
        description: MultiQC data dir
        pattern: "multiqc_data"
    - plots:
        type: file
        description: Plots created by MultiQC
        pattern: "*_data"
    - versions:
        type: file
        description: File containing software versions
        pattern: "versions.yml"
authors:
    - "@abhi18av"
    - "@bunop"
    - "@drpatelh"