name: bwameth_index
description: Performs indexing of c2t converted reference genome
keywords:
    - bwameth
    - 3-letter genome
    - index
    - methylseq
    - bisulphite
    - fasta
tools:
    - bwameth:
        description: |
            Fast and accurate alignment of BS-Seq reads
            using bwa-mem and a 3-letter genome.
        homepage: https://github.com/brentp/bwa-meth
        documentation: https://github.com/brentp/bwa-meth
        arxiv: arXiv:1401.1129
        licence: ['MIT']
input:
    - fasta:
        type: file
        description: Input genome fasta file
output:
    - index:
        type: dir
        description: Directory containing bwameth genome index
        pattern: "index"
    - versions:
        type: file
        description: File containing software versions
        pattern: "versions.yml"
authors:
    - "@phue"