[2020-11-23 18:25:23,742] multiqc [DEBUG ] No MultiQC config found: /Users/eklavya/.pyenv/versions/miniconda3-latest/lib/python3.7/site-packages/multiqc_config.yaml [2020-11-23 18:25:23,742] multiqc [DEBUG ] No MultiQC config found: /Users/eklavya/.multiqc_config.yaml [2020-11-23 18:25:23,742] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2020-11-23 18:25:23,742] multiqc [DEBUG ] Command used: /Users/eklavya/.pyenv/versions/miniconda3-latest/bin/multiqc input/ [2020-11-23 18:25:25,158] multiqc [WARNING] MultiQC Version v1.9 now available! [2020-11-23 18:25:25,158] multiqc [INFO ] This is MultiQC v1.8 [2020-11-23 18:25:25,158] multiqc [DEBUG ] Command : /Users/eklavya/.pyenv/versions/miniconda3-latest/bin/multiqc input/ [2020-11-23 18:25:25,158] multiqc [DEBUG ] Working dir : /Users/eklavya/projects/code/ORG_nf_core/modules/software/multiqc/test [2020-11-23 18:25:25,158] multiqc [INFO ] Template : default [2020-11-23 18:25:25,158] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 16:54:48) [Clang 4.0.1 (tags/RELEASE_401/final)] [2020-11-23 18:25:25,159] multiqc [INFO ] Searching : /Users/eklavya/projects/code/ORG_nf_core/modules/software/multiqc/test/input [2020-11-23 18:25:25,159] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2020-11-23 18:25:25,159] multiqc [DEBUG ] Using temporary directory for creating report: /var/folders/zp/63677vtx23d_b2_nd7mm92040000gn/T/tmph8bg8w5g [2020-11-23 18:25:25,251] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: test_1_fastqc.html [2020-11-23 18:25:25,251] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: test_2_fastqc.html [2020-11-23 18:25:25,624] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.1.1 [2020-11-23 18:25:25,625] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.1.1 [2020-11-23 18:25:25,626] multiqc [DEBUG ] No samples found: custom_content [2020-11-23 18:25:25,630] multiqc [DEBUG ] No samples found: conpair [2020-11-23 18:25:25,634] multiqc [DEBUG ] No samples found: peddy [2020-11-23 18:25:25,638] multiqc [DEBUG ] No samples found: methylQA [2020-11-23 18:25:25,642] multiqc [DEBUG ] No samples found: phantompeakqualtools [2020-11-23 18:25:25,647] multiqc [DEBUG ] No samples found: qualimap [2020-11-23 18:25:25,651] multiqc [DEBUG ] No samples found: preseq [2020-11-23 18:25:25,655] multiqc [DEBUG ] No samples found: quast [2020-11-23 18:25:25,659] multiqc [DEBUG ] No samples found: qorts [2020-11-23 18:25:25,663] multiqc [DEBUG ] No samples found: rna_seqc [2020-11-23 18:25:25,666] multiqc [DEBUG ] No samples found: rsem [2020-11-23 18:25:25,675] multiqc [DEBUG ] No samples found: rseqc [2020-11-23 18:25:25,679] multiqc [DEBUG ] No samples found: busco [2020-11-23 18:25:25,683] multiqc [DEBUG ] No samples found: goleft_indexcov [2020-11-23 18:25:25,687] multiqc [DEBUG ] No samples found: disambiguate [2020-11-23 18:25:25,691] multiqc [DEBUG ] No samples found: supernova [2020-11-23 18:25:25,700] multiqc [DEBUG ] No samples found: deeptools [2020-11-23 18:25:25,703] multiqc [DEBUG ] No samples found: sargasso [2020-11-23 18:25:25,707] multiqc [DEBUG ] No samples found: verifybamid [2020-11-23 18:25:25,711] multiqc [DEBUG ] No samples found: mirtrace [2020-11-23 18:25:25,715] multiqc [DEBUG ] No samples found: happy [2020-11-23 18:25:25,720] multiqc [DEBUG ] No samples found: homer [2020-11-23 18:25:25,723] multiqc [DEBUG ] No samples found: macs2 [2020-11-23 18:25:25,727] multiqc [DEBUG ] No samples found: theta2 [2020-11-23 18:25:25,731] multiqc [DEBUG ] No samples found: snpeff [2020-11-23 18:25:25,736] multiqc [DEBUG ] No samples found: gatk [2020-11-23 18:25:25,741] multiqc [DEBUG ] No samples found: htseq [2020-11-23 18:25:25,745] multiqc [DEBUG ] No samples found: bcftools [2020-11-23 18:25:25,750] multiqc [DEBUG ] No samples found: featureCounts [2020-11-23 18:25:25,754] multiqc [DEBUG ] No samples found: fgbio [2020-11-23 18:25:25,758] multiqc [DEBUG ] No samples found: dedup [2020-11-23 18:25:25,762] multiqc [DEBUG ] No samples found: damageprofiler [2020-11-23 18:25:25,774] multiqc [DEBUG ] No samples found: biobambam2 [2020-11-23 18:25:25,778] multiqc [DEBUG ] No samples found: mtnucratio [2020-11-23 18:25:25,781] multiqc [DEBUG ] No samples found: picard [2020-11-23 18:25:25,785] multiqc [DEBUG ] No samples found: prokka [2020-11-23 18:25:25,789] multiqc [DEBUG ] No samples found: samblaster [2020-11-23 18:25:25,795] multiqc [DEBUG ] No samples found: samtools [2020-11-23 18:25:25,799] multiqc [DEBUG ] No samples found: sexdeterrmine [2020-11-23 18:25:25,803] multiqc [DEBUG ] No samples found: bamtools [2020-11-23 18:25:25,806] multiqc [DEBUG ] No samples found: jellyfish [2020-11-23 18:25:25,812] multiqc [DEBUG ] No samples found: vcftools [2020-11-23 18:25:25,816] multiqc [DEBUG ] No samples found: longranger [2020-11-23 18:25:25,820] multiqc [DEBUG ] No samples found: stacks [2020-11-23 18:25:25,830] multiqc [DEBUG ] No samples found: bbmap [2020-11-23 18:25:25,834] multiqc [DEBUG ] No samples found: bismark [2020-11-23 18:25:25,838] multiqc [DEBUG ] No samples found: biscuit [2020-11-23 18:25:25,842] multiqc [DEBUG ] No samples found: hicexplorer [2020-11-23 18:25:25,846] multiqc [DEBUG ] No samples found: hicup [2020-11-23 18:25:25,850] multiqc [DEBUG ] No samples found: hicpro [2020-11-23 18:25:25,853] multiqc [DEBUG ] No samples found: salmon [2020-11-23 18:25:25,857] multiqc [DEBUG ] No samples found: kallisto [2020-11-23 18:25:25,861] multiqc [DEBUG ] No samples found: slamdunk [2020-11-23 18:25:25,865] multiqc [DEBUG ] No samples found: star [2020-11-23 18:25:25,868] multiqc [DEBUG ] No samples found: hisat2 [2020-11-23 18:25:25,872] multiqc [DEBUG ] No samples found: tophat [2020-11-23 18:25:25,875] multiqc [DEBUG ] No samples found: bowtie2 [2020-11-23 18:25:25,879] multiqc [DEBUG ] No samples found: bowtie1 [2020-11-23 18:25:25,883] multiqc [DEBUG ] No samples found: kat [2020-11-23 18:25:25,886] multiqc [DEBUG ] No samples found: leehom [2020-11-23 18:25:25,890] multiqc [DEBUG ] No samples found: adapterRemoval [2020-11-23 18:25:25,893] multiqc [DEBUG ] No samples found: clipandmerge [2020-11-23 18:25:25,897] multiqc [DEBUG ] No samples found: cutadapt [2020-11-23 18:25:25,901] multiqc [DEBUG ] No samples found: flexbar [2020-11-23 18:25:25,904] multiqc [DEBUG ] No samples found: trimmomatic [2020-11-23 18:25:25,908] multiqc [DEBUG ] No samples found: skewer [2020-11-23 18:25:25,912] multiqc [DEBUG ] No samples found: sortmerna [2020-11-23 18:25:25,915] multiqc [DEBUG ] No samples found: biobloomtools [2020-11-23 18:25:25,919] multiqc [DEBUG ] No samples found: fastq_screen [2020-11-23 18:25:25,922] multiqc [DEBUG ] No samples found: afterqc [2020-11-23 18:25:25,926] multiqc [DEBUG ] No samples found: fastp [2020-11-23 18:25:25,947] multiqc.modules.fastqc.fastqc [INFO ] Found 2 reports [2020-11-23 18:25:26,023] multiqc [DEBUG ] No samples found: minionqc [2020-11-23 18:25:26,027] multiqc [DEBUG ] No samples found: mosdepth [2020-11-23 18:25:26,031] multiqc [DEBUG ] No samples found: clusterflow [2020-11-23 18:25:26,035] multiqc [DEBUG ] No samples found: bcl2fastq [2020-11-23 18:25:26,039] multiqc [DEBUG ] No samples found: interop [2020-11-23 18:25:26,043] multiqc [DEBUG ] No samples found: flash [2020-11-23 18:25:26,046] multiqc [DEBUG ] No samples found: seqyclean [2020-11-23 18:25:26,050] multiqc [INFO ] Compressing plot data [2020-11-23 18:25:26,086] multiqc [INFO ] Report : multiqc_report.html [2020-11-23 18:25:26,086] multiqc [INFO ] Data : multiqc_data [2020-11-23 18:25:26,087] multiqc [DEBUG ] Moving data file from '/var/folders/zp/63677vtx23d_b2_nd7mm92040000gn/T/tmph8bg8w5g/multiqc_data/multiqc_fastqc.txt' to '/Users/eklavya/projects/code/ORG_nf_core/modules/software/multiqc/test/multiqc_data' [2020-11-23 18:25:26,087] multiqc [DEBUG ] Moving data file from '/var/folders/zp/63677vtx23d_b2_nd7mm92040000gn/T/tmph8bg8w5g/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/Users/eklavya/projects/code/ORG_nf_core/modules/software/multiqc/test/multiqc_data' [2020-11-23 18:25:26,087] multiqc [DEBUG ] Moving data file from '/var/folders/zp/63677vtx23d_b2_nd7mm92040000gn/T/tmph8bg8w5g/multiqc_data/multiqc_general_stats.txt' to '/Users/eklavya/projects/code/ORG_nf_core/modules/software/multiqc/test/multiqc_data' [2020-11-23 18:25:26,087] multiqc [DEBUG ] Moving data file from '/var/folders/zp/63677vtx23d_b2_nd7mm92040000gn/T/tmph8bg8w5g/multiqc_data/multiqc_sources.txt' to '/Users/eklavya/projects/code/ORG_nf_core/modules/software/multiqc/test/multiqc_data' [2020-11-23 18:25:26,088] multiqc [DEBUG ] Moving data file from '/var/folders/zp/63677vtx23d_b2_nd7mm92040000gn/T/tmph8bg8w5g/multiqc_data/multiqc_data.json' to '/Users/eklavya/projects/code/ORG_nf_core/modules/software/multiqc/test/multiqc_data' [2020-11-23 18:25:26,231] multiqc [INFO ] MultiQC complete