def VERSION = '1.0.2' // Version information not provided by tool on CLI process VCFLIB_VCFUNIQ { tag "$meta.id" label 'process_low' conda (params.enable_conda ? "bioconda::vcflib=1.0.2" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/vcflib:1.0.2--h3198e80_5': 'quay.io/biocontainers/vcflib:1.0.2--h3198e80_5' }" input: tuple val(meta), path(vcf), path(tbi) output: tuple val(meta), path("*.gz"), emit: vcf path "versions.yml" , emit: versions script: def args = task.ext.args ?: '' def prefix = task.ext.prefix ?: "${meta.id}" """ vcfuniq \\ $vcf \\ | bgzip -c $args > ${prefix}.vcf.gz cat <<-END_VERSIONS > versions.yml "${task.process}": vcflib: $VERSION END_VERSIONS """ }