- name: prokka
  command: nextflow run ./tests/modules/prokka -entry test_prokka -c ./tests/config/nextflow.config -c ./tests/modules/prokka/nextflow.config
  tags:
    - prokka
  files:
    - path: output/prokka/test/test.err
      md5sum: b3daedc646fddd422824e2b3e5e9229d
    - path: output/prokka/test/test.faa
      md5sum: a4ceda83262b3c222a6b1f508fb9e24b
    - path: output/prokka/test/test.ffn
      md5sum: 80f474b5367b7ea5ed23791935f65e34
    - path: output/prokka/test/test.fna
      md5sum: 787307f29a263e5657cc276ebbf7e2b3
    - path: output/prokka/test/test.fsa
      md5sum: 71bbefcb7f12046bcd3263f58cfd5404
    - path: output/prokka/test/test.gff
      md5sum: 5dbfb8fcf2db020564c16045976a0933
    - path: output/prokka/test/test.tbl
      md5sum: d8f816a066ced94b62d9618b13fb8add
    - path: output/prokka/test/test.tsv
      md5sum: da7c720c3018c5081d6a70b517b7d450
    - path: output/prokka/test/test.txt
      md5sum: b40e485ffc8eaf1feacf8d79d9751a33
    # Contain time stamps
    - path: output/prokka/test/test.gbk
    - path: output/prokka/test/test.log
    - path: output/prokka/test/test.sqn