name: bwa_index description: Create BWA index for reference genome keywords: - index - fasta - genome - reference tools: - bwa: description: | BWA is a software package for mapping DNA sequences against a large reference genome, such as the human genome. homepage: http://bio-bwa.sourceforge.net/ documentation: http://www.htslib.org/doc/samtools.html arxiv: arXiv:1303.3997 params: - outdir: type: string description: | The pipeline's output directory. By default, the module will output files into `$params.outdir/` - publish_dir_mode: type: string description: | Value for the Nextflow `publishDir` mode parameter. Available: symlink, rellink, link, copy, copyNoFollow, move. - enable_conda: type: boolean description: | Run the module with Conda using the software specified via the `conda` directive input: - fasta: type: file description: Input genome fasta file output: - index: type: file description: BWA genome index files pattern: "*.{amb,ann,bwt,pac,sa}" - version: type: file description: File containing software version pattern: "*.{version.txt}" authors: - "@drpatelh" - "@maxulysse"