name: bamtools_split
description: BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
keywords:
  - bamtools
  - bamtools/split
  - bam
  - split
  - chunk
tools:
  - bamtools:
      description: C++ API & command-line toolkit for working with BAM data
      homepage: http://github.com/pezmaster31/bamtools
      documentation: https://github.com/pezmaster31/bamtools/wiki
      tool_dev_url: http://github.com/pezmaster31/bamtools
      doi: ""
      licence: ["MIT"]

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - bam:
      type: file
      description: A list of one or more BAM files to merge and then split
      pattern: "*.bam"
  - bam_list:
      type: file
      description: |
        Optional input file containing bam files to merge before splitting,
        one line per file

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - bam:
      type: file
      description: Several Bam files
      pattern: "*.bam"

authors:
  - "@sguizard"
  - "@matthdsm"