#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { TRIMGALORE } from '../../../modules/trimgalore/main.nf'

//
// Test with single-end data
//
workflow test_trimgalore_single_end {
    input = [ [ id:'test', single_end:true ], // meta map
              [ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
            ]

    TRIMGALORE ( input )
}

//
// Test with paired-end data
//
workflow test_trimgalore_paired_end {
    input = [ [ id:'test', single_end:false ], // meta map
              [ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
                file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
            ]

    TRIMGALORE ( input )
}