name: tiddit_sv description: Identify chromosomal rearrangements. keywords: - structural - variants - vcf tools: - sv: description: Search for structural variants. homepage: https://github.com/SciLifeLab/TIDDIT documentation: https://github.com/SciLifeLab/TIDDIT/blob/master/README.md doi: 10.12688/f1000research.11168.1 input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - fasta: type: file description: Input FASTA file pattern: "*.{fasta,fa}" - fai: type: file description: FASTA index file pattern: "*.{fai}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - vcf: type: file description: vcf pattern: "*.{vcf}" - ploidy: type: file description: tab pattern: "*.{ploidy.tab}" - signals: type: file description: tab pattern: "*.{signals.tab}" - version: type: file description: File containing software version pattern: "*.{version.txt}" authors: - "@maxulysse"